miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|32544239|gb|CD860423.1|CD860423 CAAGGTTGTCTGAACTTCTTGGATCCGAGGTTACGATTGCTGGTGACAGTATTGGTGAGGAGGTTGAGAAGTTGGTTGCA
CAAATTCCAGAAGGTGGTGTTTTGCTTTTAGAGAATGTGAGGTTCCACAAGGAAGAGGAGAAGAATGATCCTGAATTTGC
CAAGAAGTTGGCTTCCCTTGCTGATCTTTATGTGAATGATGCATTTGGCACTGCCCATCGTGCTCATGCTTCTACAGAAG
GTGTTGCTAAATACTTGAAGCCCTCTGTTGCAGGATTCCTCATGCAGAAGGAGCTTGATTATCTAGTTGGAGCTGTGTCA
AACCCCAAGAAACCGTTTGCTGCCATTGTTGGTGGTTCTAAGGTGTCTTCCAAGATTGGAGTTATTGAATCCTTGTTGGA
GAAGGTTGACATTCTCTTGCTTGGTGGAGGAATGGTGTTTACCTTTTACAAAGCTCAAGGTTATTCAGTTGGGACCTCTC
TTGTGGAGGAAGACAAGCTTGGTCTTGCAACTTCACTTATTGAGAAAGCCAAGGCTAAAGGAGTTTCCCTTTTGCTTCCA
ACTGATGTGGTTATAGCTGACAAGTTTTCTGCTGATGCTAACGACAGATTG




Most similar to sp|Q42962|PGKY_TOBAC

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q42962|PGKY_TOBAC Phosphoglycerate kinase, cytosolic
           OS=Nicotiana tabacum PE=2 SV=1
          Length = 401

 Score =  357 bits (915), Expect = 4e-98
 Identities = 183/203 (90%), Positives = 197/203 (97%)
 Frame = +3

Query: 3   RLSELLGSEVTIAGDSIGEEVEKLVAQIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLA 182
           RLSELLG EV IA DSIG EVEKLVA+IPEGGVLLLENVRF+KEEEKN+PEFAKKLASLA
Sbjct: 83  RLSELLGVEVKIANDSIGPEVEKLVAEIPEGGVLLLENVRFYKEEEKNEPEFAKKLASLA 142

Query: 183 DLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSK 362
           DLYVNDAFGTAHRAHASTEGVAKYLKP+VAGFLMQKELDYLVGAV+NP+KPFAAIVGGSK
Sbjct: 143 DLYVNDAFGTAHRAHASTEGVAKYLKPAVAGFLMQKELDYLVGAVANPQKPFAAIVGGSK 202

Query: 363 VSSKIGVIESLLEKVDILLLGGGMVFTFYKAQGYSVGTSLVEEDKLGLATSLIEKAKAKG 542
           VSSKIGVIESLLEKVD+LLLGGGM+FTFYKAQGY+VG+SLVEEDKL LATSL+EKAKAKG
Sbjct: 203 VSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGYAVGSSLVEEDKLDLATSLMEKAKAKG 262

Query: 543 VSLLLPTDVVIADKFSADANDRL 611
           VSLLLPTDVVIADKF+ADAN ++
Sbjct: 263 VSLLLPTDVVIADKFAADANSKV 285